M2 transmembrane peptide of the influenza A virus in DMPC lipid bilayers bound to deuterated amantadine
Organism: Influenza virus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00599
PDB ID: 2KQT
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.0 Å
Number of TM segments = 4
Sequence positions:
A: 5-23
C: 55-72
B: 30-47
D: 80-98
Tilt angles:
A - Segment: 5-23 - Tilt: 22.7°
C - Segment: 55-72 - Tilt: 28.5°
B - Segment: 30-47 - Tilt: 27.8°
D - Segment: 80-98 - Tilt: 23.5°
Structural assessment:
MAIDEN score = -59.5844
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]