Transmembrane domains of the nAChR a4 subunit
Organism: Homo sapiens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 2LLY
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.1 Å
Number of TM segments = 4
Sequence positions:
A: 11-31|33-51|61-82|104-128
Tilt angles:
A - Segment: 11-31 - Tilt: 45.8°
A - Segment: 33-51 - Tilt: 46.9°
A - Segment: 61-82 - Tilt: 50.8°
A - Segment: 104-128 - Tilt: 53.8°
Structural assessment:
MAIDEN score = -35.6372
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]