Membrane anchor domain of the trimeric autotransporter YadA
Organism: Yersinia enterocolitica
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF03895
PDB ID: 2LME
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 7
Sequence positions:
A: 28-46
C: 242-257|264-273|278-284|294-299|305-310
B: 131-149
Tilt angles:
A - Segment: 28-46 - Tilt: 50.2°
C - Segment: 242-257 - Tilt: 45.5°
C - Segment: 264-273 - Tilt: 52.2°
C - Segment: 278-284 - Tilt: 34.9°
C - Segment: 294-299 - Tilt: 11.4°
C - Segment: 305-310 - Tilt: 11.3°
B - Segment: 131-149 - Tilt: 50.9°
Structural assessment:
MAIDEN score = 43.7529
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]