Transmembrane domain of amyloid precursor protein in micellar environment
Organism: Homo sapiens
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF03494
PDB ID: 2LOH
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.4 Å
Number of TM segments = 2
Sequence positions:
A: 5-38
B: 16-40
Tilt angles:
A - Segment: 5-38 - Tilt: 49.3°
B - Segment: 16-40 - Tilt: 39.6°
Structural assessment:
MAIDEN score = -14.2026
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]