Transmembrane domain of amyloid precursor protein WT
Organism: Homo sapiens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03494
PDB ID: 2LZ3
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 36.9 Å
Number of TM segments = 2
Sequence positions:
A: 2-25
B: 30-52
Tilt angles:
A - Segment: 2-25 - Tilt: 26.8°
B - Segment: 30-52 - Tilt: 7.7°
Structural assessment:
MAIDEN score = -10.3010
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]