Full-length transmembrane domains of human glycine receptor alpha1 subunit
Organism: Homo sapiens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 2M6I
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.7 Å
Number of TM segments = 20
Sequence positions:
A: 13-28|35-49|71-87|117-132
C: 313-328|335-349|371-387|416-431
B: 164-178|185-199|221-237|266-281
E: 613-628|635-649|671-685|717-732
D: 463-478|485-499|521-537|567-582
Tilt angles:
A - Segment: 13-28 - Tilt: 22.8°
A - Segment: 35-49 - Tilt: 15.3°
A - Segment: 71-87 - Tilt: 26.5°
A - Segment: 117-132 - Tilt: 18.7°
C - Segment: 313-328 - Tilt: 23.1°
C - Segment: 335-349 - Tilt: 14.4°
C - Segment: 371-387 - Tilt: 25.5°
C - Segment: 416-431 - Tilt: 19.8°
B - Segment: 164-178 - Tilt: 25.1°
B - Segment: 185-199 - Tilt: 13.9°
B - Segment: 221-237 - Tilt: 25.2°
B - Segment: 266-281 - Tilt: 19.0°
E - Segment: 613-628 - Tilt: 23.9°
E - Segment: 635-649 - Tilt: 16.5°
E - Segment: 671-685 - Tilt: 19.4°
E - Segment: 717-732 - Tilt: 20.1°
D - Segment: 463-478 - Tilt: 24.7°
D - Segment: 485-499 - Tilt: 15.8°
D - Segment: 521-537 - Tilt: 27.0°
D - Segment: 567-582 - Tilt: 20.0°
Structural assessment:
MAIDEN score = -148.6642
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]