Transmembrane domain of the full-length inner membrane protein YgaP from Escherichia coli
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00581
PDB ID: 2MPN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 33.9 Å
Number of TM segments = 4
Sequence positions:
A: 112-134|143-163
B: 111-134|140-163
Tilt angles:
A - Segment: 112-134 - Tilt: 19.5°
A - Segment: 143-163 - Tilt: 8.3°
B - Segment: 111-134 - Tilt: 22.0°
B - Segment: 140-163 - Tilt: 26.0°
Structural assessment:
MAIDEN score = -0.4419
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]