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Transmembrane domain of the full-length inner membrane protein YgaP from Escherichia coli

Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical

Pfam Acc: PF00581
PDB ID: 2MPN


Membrane assignment:

Output PDB file Download

Hydrophobic thickness = 33.3 Å

Number of TM segments = 4

Sequence positions:
A: 7-29|38-58
B: 74-97|103-126

Tilt angles:
A - Segment: 7-29 - Tilt: 18.6°
A - Segment: 38-58 - Tilt: 8.1°
B - Segment: 74-97 - Tilt: 21.1°
B - Segment: 103-126 - Tilt: 25.1°


Structural assessment:

MAIDEN score = -17.4739
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.


Scores for all residue pairs Download




[creation date: Sep-08-2016]