Outer membrane protein OprD from Pseudomonas aeruginosa
Organism: Pseudomonas aeruginosa
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF03573
PDB ID: 2ODJ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 15
Sequence positions:
A: 20-29|41-51|61-74|151-157|185-191|198-204|213-219|230-236|254-259|267-272|315-321|334-340|369-375|387-394|408-415
Tilt angles:
A - Segment: 20-29 - Tilt: 49.3°
A - Segment: 41-51 - Tilt: 52.5°
A - Segment: 61-74 - Tilt: 64.1°
A - Segment: 151-157 - Tilt: 32.6°
A - Segment: 185-191 - Tilt: 32.1°
A - Segment: 198-204 - Tilt: 29.6°
A - Segment: 213-219 - Tilt: 33.7°
A - Segment: 230-236 - Tilt: 31.1°
A - Segment: 254-259 - Tilt: 33.7°
A - Segment: 267-272 - Tilt: 32.3°
A - Segment: 315-321 - Tilt: 29.9°
A - Segment: 334-340 - Tilt: 34.1°
A - Segment: 369-375 - Tilt: 35.0°
A - Segment: 387-394 - Tilt: 39.3°
A - Segment: 408-415 - Tilt: 39.2°
Structural assessment:
MAIDEN score = 58.3469
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]