Outer membrane protein OprD from Pseudomonas aeruginosa
Organism: Pseudomonas aeruginosa
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF03573
PDB ID: 2ODJ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 16
Sequence positions:
A: 16-25|40-50|54-62|77-84|87-108|115-120|127-132|150-156|163-169|177-184|195-202|218-225|229-238|271-280|285-295|367-381
Tilt angles:
A - Segment: 16-25 - Tilt: 48.5°
A - Segment: 40-50 - Tilt: 51.1°
A - Segment: 54-62 - Tilt: 47.3°
A - Segment: 77-84 - Tilt: 37.7°
A - Segment: 87-108 - Tilt: 51.8°
A - Segment: 115-120 - Tilt: 24.3°
A - Segment: 127-132 - Tilt: 28.1°
A - Segment: 150-156 - Tilt: 27.7°
A - Segment: 163-169 - Tilt: 31.8°
A - Segment: 177-184 - Tilt: 39.5°
A - Segment: 195-202 - Tilt: 45.2°
A - Segment: 218-225 - Tilt: 46.6°
A - Segment: 229-238 - Tilt: 48.9°
A - Segment: 271-280 - Tilt: 52.9°
A - Segment: 285-295 - Tilt: 46.6°
A - Segment: 367-381 - Tilt: 51.9°
Structural assessment:
MAIDEN score = 510.0209
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]