AcrB in complex with a novel transmembrane helix
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00873
PDB ID: 2RDD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 12
Sequence positions:
A: 8-24|336-354|362-380|393-410|436-454|468-490|533-550|855-873|876-904|908-926|956-974|982-1001
Tilt angles:
A - Segment: 8-24 - Tilt: 21.6°
A - Segment: 336-354 - Tilt: 3.8°
A - Segment: 362-380 - Tilt: 31.5°
A - Segment: 393-410 - Tilt: 13.6°
A - Segment: 436-454 - Tilt: 22.5°
A - Segment: 468-490 - Tilt: 37.2°
A - Segment: 533-550 - Tilt: 17.8°
A - Segment: 855-873 - Tilt: 31.3°
A - Segment: 876-904 - Tilt: 46.7°
A - Segment: 908-926 - Tilt: 19.8°
A - Segment: 956-974 - Tilt: 29.9°
A - Segment: 982-1001 - Tilt: 27.0°
Structural assessment:
MAIDEN score = -97.0379
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]