Open state of tolc outer membrane component of mutlidrug efflux pumps
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 2VDD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 13
Sequence positions:
A: 55-71|85-109|247-282|327-347
C: 217-226|257-272|307-314|373-441
B: 130-151|196-218|369-389|393-411|443-449
Tilt angles:
A - Segment: 55-71 - Tilt: 58.8°
A - Segment: 85-109 - Tilt: 67.9°
A - Segment: 247-282 - Tilt: 73.7°
A - Segment: 327-347 - Tilt: 61.8°
C - Segment: 217-226 - Tilt: 29.0°
C - Segment: 257-272 - Tilt: 54.9°
C - Segment: 307-314 - Tilt: 32.8°
C - Segment: 373-441 - Tilt: 54.8°
B - Segment: 130-151 - Tilt: 62.1°
B - Segment: 196-218 - Tilt: 26.0°
B - Segment: 369-389 - Tilt: 45.1°
B - Segment: 393-411 - Tilt: 51.2°
B - Segment: 443-449 - Tilt: 7.3°
Structural assessment:
MAIDEN score = -5.7057
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]