Open state of tolc outer membrane component of mutlidrug efflux pumps
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 2VDD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 9
Sequence positions:
A: 41-47|65-74|232-258|296-318
C: 1145-1152|1155-1244
B: 530-555|621-629|844-853
Tilt angles:
A - Segment: 41-47 - Tilt: 41.6°
A - Segment: 65-74 - Tilt: 55.1°
A - Segment: 232-258 - Tilt: 71.6°
A - Segment: 296-318 - Tilt: 60.7°
C - Segment: 1145-1152 - Tilt: 35.0°
C - Segment: 1155-1244 - Tilt: 75.7°
B - Segment: 530-555 - Tilt: 62.1°
B - Segment: 621-629 - Tilt: 30.0°
B - Segment: 844-853 - Tilt: 16.4°
Structural assessment:
MAIDEN score = 127.4147
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]