Open state of tolc outer membrane component of mutlidrug efflux pumps
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 2VDE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 66-75|78-89|133-158|192-215
C: 67-74|82-90|277-286|326-348
B: 217-225|269-274|305-311|427-442
Tilt angles:
A - Segment: 66-75 - Tilt: 52.2°
A - Segment: 78-89 - Tilt: 58.9°
A - Segment: 133-158 - Tilt: 65.2°
A - Segment: 192-215 - Tilt: 36.1°
C - Segment: 67-74 - Tilt: 43.9°
C - Segment: 82-90 - Tilt: 43.0°
C - Segment: 277-286 - Tilt: 54.3°
C - Segment: 326-348 - Tilt: 55.5°
B - Segment: 217-225 - Tilt: 13.6°
B - Segment: 269-274 - Tilt: 31.4°
B - Segment: 305-311 - Tilt: 38.1°
B - Segment: 427-442 - Tilt: 56.9°
Structural assessment:
MAIDEN score = -2.6250
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]