Open state of tolc outer membrane component of mutlidrug efflux pumps
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 2VDE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 11
Sequence positions:
A: 286-294|308-406
C: 959-984|1035-1058|1202-1226|1228-1250|1273-1283
B: 470-477|493-509|661-688|725-748
Tilt angles:
A - Segment: 286-294 - Tilt: 38.2°
A - Segment: 308-406 - Tilt: 54.8°
C - Segment: 959-984 - Tilt: 61.5°
C - Segment: 1035-1058 - Tilt: 44.7°
C - Segment: 1202-1226 - Tilt: 45.9°
C - Segment: 1228-1250 - Tilt: 55.8°
C - Segment: 1273-1283 - Tilt: 12.2°
B - Segment: 470-477 - Tilt: 41.7°
B - Segment: 493-509 - Tilt: 62.8°
B - Segment: 661-688 - Tilt: 72.8°
B - Segment: 725-748 - Tilt: 56.0°
Structural assessment:
MAIDEN score = 133.2059
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]