Polysulfide reductase with bound quinone (UQ1)
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03916
PDB ID: 2VPX
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.2 Å
Number of TM segments = 16
Sequence positions:
C: 942-965|977-996|1015-1034|1042-1064|1073-1092|1102-1121|1134-1150|1154-1172
G: 2123-2145|2157-2176|2195-2214|2223-2243|2253-2272|2281-2300|2314-2330|2333-2352
Tilt angles:
C - Segment: 942-965 - Tilt: 35.1°
C - Segment: 977-996 - Tilt: 27.2°
C - Segment: 1015-1034 - Tilt: 15.1°
C - Segment: 1042-1064 - Tilt: 33.2°
C - Segment: 1073-1092 - Tilt: 17.6°
C - Segment: 1102-1121 - Tilt: 10.6°
C - Segment: 1134-1150 - Tilt: 15.2°
C - Segment: 1154-1172 - Tilt: 17.4°
G - Segment: 2123-2145 - Tilt: 37.7°
G - Segment: 2157-2176 - Tilt: 24.1°
G - Segment: 2195-2214 - Tilt: 16.8°
G - Segment: 2223-2243 - Tilt: 37.2°
G - Segment: 2253-2272 - Tilt: 20.7°
G - Segment: 2281-2300 - Tilt: 21.6°
G - Segment: 2314-2330 - Tilt: 10.1°
G - Segment: 2333-2352 - Tilt: 13.5°
Structural assessment:
MAIDEN score = -72.5755
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]