P.pastoris aquaporin, Aqy1, in a closed conformation at pH 3.5
Organism: Pichia pastoris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00230
PDB ID: 2W2E
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.5 Å
Number of TM segments = 6
Sequence positions:
A: 49-66|86-102|131-148|169-186|201-216|242-259
Tilt angles:
A - Segment: 49-66 - Tilt: 28.8°
A - Segment: 86-102 - Tilt: 32.3°
A - Segment: 131-148 - Tilt: 43.0°
A - Segment: 169-186 - Tilt: 33.5°
A - Segment: 201-216 - Tilt: 19.6°
A - Segment: 242-259 - Tilt: 39.8°
Structural assessment:
MAIDEN score = -77.6113
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]