P.pastoris aquaporin, Aqy1, in a closed conformation at pH 3.5
Organism: Pichia pastoris
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00230
PDB ID: 2W2E
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 6
Sequence positions:
A: 41-55|79-91|120-141|165-179|189-201|235-256
Tilt angles:
A - Segment: 41-55 - Tilt: 29.7°
A - Segment: 79-91 - Tilt: 2.8°
A - Segment: 120-141 - Tilt: 56.4°
A - Segment: 165-179 - Tilt: 32.2°
A - Segment: 189-201 - Tilt: 25.8°
A - Segment: 235-256 - Tilt: 57.0°
Structural assessment:
MAIDEN score = -32.1080
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]