Assembled cytolysin a pore
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF06109
PDB ID: 2WCD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.4 Å
Number of TM segments = 22
Sequence positions:
G: 30-62|139-178|188-219
F: 55-80|120-141|220-268
I: 27-57
H: 23-50
J: 39-86|132-186|188-233
Q: 66-106|109-131
S: 16-50
R: 40-68|131-160|193-241
U: 26-50
T: 19-39
V: 39-90|154-186|195-233
Tilt angles:
G - Segment: 30-62 - Tilt: 66.1°
G - Segment: 139-178 - Tilt: 76.9°
G - Segment: 188-219 - Tilt: 67.5°
F - Segment: 55-80 - Tilt: 66.2°
F - Segment: 120-141 - Tilt: 65.0°
F - Segment: 220-268 - Tilt: 78.7°
I - Segment: 27-57 - Tilt: 69.8°
H - Segment: 23-50 - Tilt: 64.6°
J - Segment: 39-86 - Tilt: 78.1°
J - Segment: 132-186 - Tilt: 77.9°
J - Segment: 188-233 - Tilt: 73.2°
Q - Segment: 66-106 - Tilt: 74.0°
Q - Segment: 109-131 - Tilt: 61.6°
S - Segment: 16-50 - Tilt: 70.3°
R - Segment: 40-68 - Tilt: 70.0°
R - Segment: 131-160 - Tilt: 66.8°
R - Segment: 193-241 - Tilt: 75.9°
U - Segment: 26-50 - Tilt: 59.7°
T - Segment: 19-39 - Tilt: 54.0°
V - Segment: 39-90 - Tilt: 77.7°
V - Segment: 154-186 - Tilt: 71.5°
V - Segment: 195-233 - Tilt: 70.3°
Structural assessment:
MAIDEN score = -173.2753
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]