Assembled cytolysin a pore
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF06109
PDB ID: 2WCD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.6 Å
Number of TM segments = 20
Sequence positions:
C: 614-646|679-704|779-844
E: 1152-1183
D: 871-909|986-1030|1035-1067
G: 1733-1788
F: 1441-1468
M: 3455-3509|3523-3599|3612-3653
U: 5727-5761|5824-5860|5883-5934
T: 5470-5514|5516-5542
W: 6282-6306
V: 5994-6028
X: 6574-6609
Tilt angles:
C - Segment: 614-646 - Tilt: 66.5°
C - Segment: 679-704 - Tilt: 63.6°
C - Segment: 779-844 - Tilt: 72.7°
E - Segment: 1152-1183 - Tilt: 62.7°
D - Segment: 871-909 - Tilt: 72.1°
D - Segment: 986-1030 - Tilt: 73.0°
D - Segment: 1035-1067 - Tilt: 64.0°
G - Segment: 1733-1788 - Tilt: 76.5°
F - Segment: 1441-1468 - Tilt: 59.6°
M - Segment: 3455-3509 - Tilt: 77.2°
M - Segment: 3523-3599 - Tilt: 80.4°
M - Segment: 3612-3653 - Tilt: 72.4°
U - Segment: 5727-5761 - Tilt: 69.9°
U - Segment: 5824-5860 - Tilt: 70.3°
U - Segment: 5883-5934 - Tilt: 75.3°
T - Segment: 5470-5514 - Tilt: 71.7°
T - Segment: 5516-5542 - Tilt: 60.3°
W - Segment: 6282-6306 - Tilt: 53.9°
V - Segment: 5994-6028 - Tilt: 69.5°
X - Segment: 6574-6609 - Tilt: 68.4°
Structural assessment:
MAIDEN score = -96.2653
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]