Sodium-coupled glycine betaine symporter betp from corynebacterium glutamicum with bound substrate
Organism: Corynebacterium glutamicum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02028
PDB ID: 2WIT
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.7 Å
Number of TM segments = 29
Sequence positions:
A: 8-25|31-59|83-102|126-142|184-202|305-324|340-356|398-418|432-448|459-476
C: 1040-1057|1066-1088|1123-1137|1153-1171|1218-1244|1248-1262|1282-1324|1336-1351|1375-1393|1409-1439|1469-1484|1486-1507
B: 576-592|614-629|660-679|704-725|843-861|870-887|998-1013
Tilt angles:
A - Segment: 8-25 - Tilt: 14.8°
A - Segment: 31-59 - Tilt: 55.6°
A - Segment: 83-102 - Tilt: 30.1°
A - Segment: 126-142 - Tilt: 19.2°
A - Segment: 184-202 - Tilt: 32.7°
A - Segment: 305-324 - Tilt: 33.5°
A - Segment: 340-356 - Tilt: 15.9°
A - Segment: 398-418 - Tilt: 39.9°
A - Segment: 432-448 - Tilt: 34.7°
A - Segment: 459-476 - Tilt: 33.4°
C - Segment: 1040-1057 - Tilt: 21.7°
C - Segment: 1066-1088 - Tilt: 49.0°
C - Segment: 1123-1137 - Tilt: 15.2°
C - Segment: 1153-1171 - Tilt: 40.8°
C - Segment: 1218-1244 - Tilt: 57.8°
C - Segment: 1248-1262 - Tilt: 7.8°
C - Segment: 1282-1324 - Tilt: 54.9°
C - Segment: 1336-1351 - Tilt: 12.1°
C - Segment: 1375-1393 - Tilt: 36.5°
C - Segment: 1409-1439 - Tilt: 19.6°
C - Segment: 1469-1484 - Tilt: 2.3°
C - Segment: 1486-1507 - Tilt: 49.5°
B - Segment: 576-592 - Tilt: 20.5°
B - Segment: 614-629 - Tilt: 12.5°
B - Segment: 660-679 - Tilt: 42.8°
B - Segment: 704-725 - Tilt: 47.7°
B - Segment: 843-861 - Tilt: 29.3°
B - Segment: 870-887 - Tilt: 35.7°
B - Segment: 998-1013 - Tilt: 21.4°
Structural assessment:
MAIDEN score = -256.4375
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]