Carnitine transporter from Escherichia coli
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02028
PDB ID: 2WSX
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.8 Å
Number of TM segments = 36
Sequence positions:
A: 8-23|32-56|88-105|124-142|184-212|224-241|250-299|304-321|345-363|395-423|439-457|462-479
C: 999-1015|1027-1048|1080-1097|1116-1134|1176-1201|1216-1233|1239-1291|1296-1315|1337-1355|1387-1416|1431-1449|1454-1472
B: 504-519|528-552|584-601|620-638|683-708|719-737|746-795|800-817|841-859|891-916|936-954|958-975
Tilt angles:
A - Segment: 8-23 - Tilt: 3.3°
A - Segment: 32-56 - Tilt: 45.1°
A - Segment: 88-105 - Tilt: 18.1°
A - Segment: 124-142 - Tilt: 29.9°
A - Segment: 184-212 - Tilt: 55.1°
A - Segment: 224-241 - Tilt: 16.8°
A - Segment: 250-299 - Tilt: 61.8°
A - Segment: 304-321 - Tilt: 23.3°
A - Segment: 345-363 - Tilt: 18.1°
A - Segment: 395-423 - Tilt: 55.5°
A - Segment: 439-457 - Tilt: 27.8°
A - Segment: 462-479 - Tilt: 24.3°
C - Segment: 999-1015 - Tilt: 6.4°
C - Segment: 1027-1048 - Tilt: 40.5°
C - Segment: 1080-1097 - Tilt: 18.6°
C - Segment: 1116-1134 - Tilt: 30.7°
C - Segment: 1176-1201 - Tilt: 52.4°
C - Segment: 1216-1233 - Tilt: 17.5°
C - Segment: 1239-1291 - Tilt: 62.5°
C - Segment: 1296-1315 - Tilt: 30.8°
C - Segment: 1337-1355 - Tilt: 17.9°
C - Segment: 1387-1416 - Tilt: 55.0°
C - Segment: 1431-1449 - Tilt: 28.7°
C - Segment: 1454-1472 - Tilt: 21.9°
B - Segment: 504-519 - Tilt: 3.1°
B - Segment: 528-552 - Tilt: 45.7°
B - Segment: 584-601 - Tilt: 17.8°
B - Segment: 620-638 - Tilt: 29.5°
B - Segment: 683-708 - Tilt: 54.4°
B - Segment: 719-737 - Tilt: 14.0°
B - Segment: 746-795 - Tilt: 61.7°
B - Segment: 800-817 - Tilt: 23.1°
B - Segment: 841-859 - Tilt: 18.1°
B - Segment: 891-916 - Tilt: 54.6°
B - Segment: 936-954 - Tilt: 25.4°
B - Segment: 958-975 - Tilt: 24.3°
Structural assessment:
MAIDEN score = -402.5003
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]