Mammalian sec61 complex bound to the actively translating wheat germ 80s ribosome
Organism: Canis lupus familiaris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2WWB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.7 Å
Number of TM segments = 10
Sequence positions:
A: 39-52|61-90|122-137|144-162|179-195|244-258|290-309|361-375
C: 76-91
B: 40-59
Tilt angles:
A - Segment: 39-52 - Tilt: 39.2°
A - Segment: 61-90 - Tilt: 26.2°
A - Segment: 122-137 - Tilt: 9.8°
A - Segment: 144-162 - Tilt: 42.8°
A - Segment: 179-195 - Tilt: 35.7°
A - Segment: 244-258 - Tilt: 31.3°
A - Segment: 290-309 - Tilt: 44.5°
A - Segment: 361-375 - Tilt: 19.3°
C - Segment: 76-91 - Tilt: 28.0°
B - Segment: 40-59 - Tilt: 47.8°
Structural assessment:
MAIDEN score = -26.9890
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]