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Mammalian sec61 complex bound to the actively translating wheat germ 80s ribosome

Organism: Canis lupus familiaris
Model: Experimental
Representation: Coarse-grained
Type: α-helical

Pfam Acc: PF00344
PDB ID: 2WWB


Membrane assignment:

Output PDB file Download

Hydrophobic thickness = 27.0 Å

Number of TM segments = 10

Sequence positions:
A: 37-52|54-90|119-137|144-163|178-197|241-258|288-314|358-375
C: 557-575
B: 516-537

Tilt angles:
A - Segment: 37-52 - Tilt: 25.2°
A - Segment: 54-90 - Tilt: 35.9°
A - Segment: 119-137 - Tilt: 10.0°
A - Segment: 144-163 - Tilt: 30.9°
A - Segment: 178-197 - Tilt: 27.8°
A - Segment: 241-258 - Tilt: 24.9°
A - Segment: 288-314 - Tilt: 49.5°
A - Segment: 358-375 - Tilt: 24.5°
C - Segment: 557-575 - Tilt: 21.6°
B - Segment: 516-537 - Tilt: 47.9°


Structural assessment:

MAIDEN score = -60.1909
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.


Scores for all residue pairs Download




[creation date: Sep-08-2016]