Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)
Organism: Bos taurus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00361
PDB ID: 2YBB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 77
Sequence positions:
C: 28-46|86-107|109-126|184-200|224-240|291-308|320-336|350-369
E: 34-52
D: 208-224
G: 37-59
K: 18-35
J: 8-32
M: 23-40|65-81
L: 19-39|57-76|100-117|144-161|190-208|232-251|276-291|301-318|343-361|371-390|412-430|453-470
O: 82-99
N: 17-34|39-55|85-102|126-144|164-179|199-216|238-258
R: 19-36
U: 33-52
T: 23-40
W: 23-39
V: 17-33
X: 16-34
c: 26-46|184-201|220-238|295-310|313-332|356-373
e: 31-52
d: 211-227
g: 24-54
k: 17-35
j: 3-32
m: 104-121|203-220|502-518|605-659|707-724|905-921|1541-1618
o: 97-117|403-422|602-651|703-719|906-922|1203-1219
n: 102-119|603-651|712-728
p: 105-122|206-222|298-315|404-421|501-518|704-720|799-818|998-1015|1105-1121
Tilt angles:
C - Segment: 28-46 - Tilt: 41.4°
C - Segment: 86-107 - Tilt: 35.9°
C - Segment: 109-126 - Tilt: 12.9°
C - Segment: 184-200 - Tilt: 21.8°
C - Segment: 224-240 - Tilt: 11.8°
C - Segment: 291-308 - Tilt: 17.0°
C - Segment: 320-336 - Tilt: 19.0°
C - Segment: 350-369 - Tilt: 8.0°
E - Segment: 34-52 - Tilt: 34.2°
D - Segment: 208-224 - Tilt: 6.8°
G - Segment: 37-59 - Tilt: 41.7°
K - Segment: 18-35 - Tilt: 30.3°
J - Segment: 8-32 - Tilt: 27.4°
M - Segment: 23-40 - Tilt: 28.3°
M - Segment: 65-81 - Tilt: 16.6°
L - Segment: 19-39 - Tilt: 37.1°
L - Segment: 57-76 - Tilt: 22.2°
L - Segment: 100-117 - Tilt: 29.5°
L - Segment: 144-161 - Tilt: 26.0°
L - Segment: 190-208 - Tilt: 31.5°
L - Segment: 232-251 - Tilt: 28.9°
L - Segment: 276-291 - Tilt: 15.9°
L - Segment: 301-318 - Tilt: 30.4°
L - Segment: 343-361 - Tilt: 42.2°
L - Segment: 371-390 - Tilt: 19.5°
L - Segment: 412-430 - Tilt: 33.8°
L - Segment: 453-470 - Tilt: 37.5°
O - Segment: 82-99 - Tilt: 33.3°
N - Segment: 17-34 - Tilt: 13.3°
N - Segment: 39-55 - Tilt: 21.0°
N - Segment: 85-102 - Tilt: 21.2°
N - Segment: 126-144 - Tilt: 16.5°
N - Segment: 164-179 - Tilt: 9.6°
N - Segment: 199-216 - Tilt: 35.0°
N - Segment: 238-258 - Tilt: 31.6°
R - Segment: 19-36 - Tilt: 20.7°
U - Segment: 33-52 - Tilt: 27.8°
T - Segment: 23-40 - Tilt: 10.1°
W - Segment: 23-39 - Tilt: 28.0°
V - Segment: 17-33 - Tilt: 11.7°
X - Segment: 16-34 - Tilt: 23.4°
c - Segment: 26-46 - Tilt: 41.5°
c - Segment: 184-201 - Tilt: 24.9°
c - Segment: 220-238 - Tilt: 17.7°
c - Segment: 295-310 - Tilt: 32.7°
c - Segment: 313-332 - Tilt: 6.1°
c - Segment: 356-373 - Tilt: 21.9°
e - Segment: 31-52 - Tilt: 42.1°
d - Segment: 211-227 - Tilt: 19.1°
g - Segment: 24-54 - Tilt: 57.9°
k - Segment: 17-35 - Tilt: 29.7°
j - Segment: 3-32 - Tilt: 35.2°
m - Segment: 104-121 - Tilt: 34.4°
m - Segment: 203-220 - Tilt: 17.6°
m - Segment: 502-518 - Tilt: 23.2°
m - Segment: 605-659 - Tilt: 33.6°
m - Segment: 707-724 - Tilt: 23.5°
m - Segment: 905-921 - Tilt: 11.0°
m - Segment: 1541-1618 - Tilt: 74.5°
o - Segment: 97-117 - Tilt: 39.8°
o - Segment: 403-422 - Tilt: 33.7°
o - Segment: 602-651 - Tilt: 28.6°
o - Segment: 703-719 - Tilt: 25.1°
o - Segment: 906-922 - Tilt: 23.9°
o - Segment: 1203-1219 - Tilt: 23.3°
n - Segment: 102-119 - Tilt: 32.1°
n - Segment: 603-651 - Tilt: 26.3°
n - Segment: 712-728 - Tilt: 25.6°
p - Segment: 105-122 - Tilt: 14.3°
p - Segment: 206-222 - Tilt: 18.2°
p - Segment: 298-315 - Tilt: 15.2°
p - Segment: 404-421 - Tilt: 12.0°
p - Segment: 501-518 - Tilt: 19.8°
p - Segment: 704-720 - Tilt: 23.2°
p - Segment: 799-818 - Tilt: 34.6°
p - Segment: 998-1015 - Tilt: 23.0°
p - Segment: 1105-1121 - Tilt: 14.4°
Structural assessment:
MAIDEN score = -304.1203
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]