Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)
Organism: Bos taurus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00361
PDB ID: 2YBB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.4 Å
Number of TM segments = 52
Sequence positions:
C: 3250-3267|3308-3325|3332-3346|3406-3421|3446-3461|3513-3529|3543-3558|3572-3588
E: 3877-3894
D: 3809-3824
G: 4181-4196
K: 4385-4400
J: 4336-4352
M: 4942-4958|4983-4998
L: 4423-4439|4462-4478|4504-4519|4548-4563|4595-4612|4636-4652|4682-4695|4705-4721|4746-4764|4776-4794|4816-4833|4857-4874
O: 5484-5499
N: 5162-5177|5185-5199|5230-5245|5271-5286|5310-5324|5342-5359|5386-5403
R: 5779-5794
U: 6022-6040
T: 5939-5954
W: 6117-6133
V: 6057-6071
X: 6158-6173
c: 7171-7189|7332-7348|7367-7382|7443-7457|7459-7476|7504-7521
e: 7797-7815
d: 7738-7754
g: 8085-8113
k: 8311-8329
j: 8248-8274
Tilt angles:
C - Segment: 3250-3267 - Tilt: 36.9°
C - Segment: 3308-3325 - Tilt: 34.6°
C - Segment: 3332-3346 - Tilt: 12.9°
C - Segment: 3406-3421 - Tilt: 12.4°
C - Segment: 3446-3461 - Tilt: 17.2°
C - Segment: 3513-3529 - Tilt: 11.6°
C - Segment: 3543-3558 - Tilt: 7.9°
C - Segment: 3572-3588 - Tilt: 19.3°
E - Segment: 3877-3894 - Tilt: 32.5°
D - Segment: 3809-3824 - Tilt: 8.1°
G - Segment: 4181-4196 - Tilt: 22.2°
K - Segment: 4385-4400 - Tilt: 14.8°
J - Segment: 4336-4352 - Tilt: 25.6°
M - Segment: 4942-4958 - Tilt: 25.8°
M - Segment: 4983-4998 - Tilt: 11.8°
L - Segment: 4423-4439 - Tilt: 34.0°
L - Segment: 4462-4478 - Tilt: 10.6°
L - Segment: 4504-4519 - Tilt: 18.1°
L - Segment: 4548-4563 - Tilt: 17.3°
L - Segment: 4595-4612 - Tilt: 32.5°
L - Segment: 4636-4652 - Tilt: 28.2°
L - Segment: 4682-4695 - Tilt: 9.8°
L - Segment: 4705-4721 - Tilt: 38.0°
L - Segment: 4746-4764 - Tilt: 41.1°
L - Segment: 4776-4794 - Tilt: 28.9°
L - Segment: 4816-4833 - Tilt: 40.5°
L - Segment: 4857-4874 - Tilt: 36.7°
O - Segment: 5484-5499 - Tilt: 21.5°
N - Segment: 5162-5177 - Tilt: 4.7°
N - Segment: 5185-5199 - Tilt: 18.6°
N - Segment: 5230-5245 - Tilt: 13.9°
N - Segment: 5271-5286 - Tilt: 13.3°
N - Segment: 5310-5324 - Tilt: 11.3°
N - Segment: 5342-5359 - Tilt: 26.2°
N - Segment: 5386-5403 - Tilt: 33.3°
R - Segment: 5779-5794 - Tilt: 11.5°
U - Segment: 6022-6040 - Tilt: 32.4°
T - Segment: 5939-5954 - Tilt: 3.4°
W - Segment: 6117-6133 - Tilt: 23.6°
V - Segment: 6057-6071 - Tilt: 15.4°
X - Segment: 6158-6173 - Tilt: 25.8°
c - Segment: 7171-7189 - Tilt: 35.5°
c - Segment: 7332-7348 - Tilt: 23.3°
c - Segment: 7367-7382 - Tilt: 9.7°
c - Segment: 7443-7457 - Tilt: 31.8°
c - Segment: 7459-7476 - Tilt: 8.6°
c - Segment: 7504-7521 - Tilt: 15.2°
e - Segment: 7797-7815 - Tilt: 40.4°
d - Segment: 7738-7754 - Tilt: 13.3°
g - Segment: 8085-8113 - Tilt: 57.9°
k - Segment: 8311-8329 - Tilt: 32.7°
j - Segment: 8248-8274 - Tilt: 49.9°
Structural assessment:
MAIDEN score = -309.4751
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]