Caa3-type cytochrome oxidase
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00115
PDB ID: 2YEV
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.2 Å
Number of TM segments = 22
Sequence positions:
E: 41-62|83-100
D: 27-47|72-92|108-127|155-175|196-217|244-265|281-299|313-334|345-368|383-403|417-435|466-486|556-573|579-597|620-637|657-675|691-710|731-752|769-790
F: 35-56
Tilt angles:
E - Segment: 41-62 - Tilt: 36.1°
E - Segment: 83-100 - Tilt: 15.7°
D - Segment: 27-47 - Tilt: 38.6°
D - Segment: 72-92 - Tilt: 15.9°
D - Segment: 108-127 - Tilt: 21.9°
D - Segment: 155-175 - Tilt: 33.8°
D - Segment: 196-217 - Tilt: 35.9°
D - Segment: 244-265 - Tilt: 39.3°
D - Segment: 281-299 - Tilt: 14.4°
D - Segment: 313-334 - Tilt: 37.0°
D - Segment: 345-368 - Tilt: 44.8°
D - Segment: 383-403 - Tilt: 20.3°
D - Segment: 417-435 - Tilt: 32.2°
D - Segment: 466-486 - Tilt: 31.6°
D - Segment: 556-573 - Tilt: 13.0°
D - Segment: 579-597 - Tilt: 11.8°
D - Segment: 620-637 - Tilt: 27.3°
D - Segment: 657-675 - Tilt: 14.7°
D - Segment: 691-710 - Tilt: 11.6°
D - Segment: 731-752 - Tilt: 31.5°
D - Segment: 769-790 - Tilt: 37.2°
F - Segment: 35-56 - Tilt: 35.7°
Structural assessment:
MAIDEN score = -279.6602
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]