Caa3-type cytochrome oxidase
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00115
PDB ID: 2YEV
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.8 Å
Number of TM segments = 22
Sequence positions:
E: 799-820|847-866
D: 16-39|58-79|97-116|143-163|186-206|231-250|273-289|298-319|337-359|369-391|407-428|451-474|544-562|569-586|609-629|646-664|679-697|720-741|755-779
F: 1133-1155
Tilt angles:
E - Segment: 799-820 - Tilt: 31.9°
E - Segment: 847-866 - Tilt: 6.9°
D - Segment: 16-39 - Tilt: 42.0°
D - Segment: 58-79 - Tilt: 15.3°
D - Segment: 97-116 - Tilt: 26.0°
D - Segment: 143-163 - Tilt: 19.6°
D - Segment: 186-206 - Tilt: 31.4°
D - Segment: 231-250 - Tilt: 26.6°
D - Segment: 273-289 - Tilt: 12.4°
D - Segment: 298-319 - Tilt: 32.6°
D - Segment: 337-359 - Tilt: 39.9°
D - Segment: 369-391 - Tilt: 27.0°
D - Segment: 407-428 - Tilt: 36.7°
D - Segment: 451-474 - Tilt: 40.7°
D - Segment: 544-562 - Tilt: 13.1°
D - Segment: 569-586 - Tilt: 14.0°
D - Segment: 609-629 - Tilt: 31.0°
D - Segment: 646-664 - Tilt: 15.8°
D - Segment: 679-697 - Tilt: 14.1°
D - Segment: 720-741 - Tilt: 38.0°
D - Segment: 755-779 - Tilt: 40.0°
F - Segment: 1133-1155 - Tilt: 37.3°
Structural assessment:
MAIDEN score = -211.4078
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]