Modeling Barmah Forest virus structural proteins
Organism: Barmah forest virus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00869
PDB ID: 2YEW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 36.0 Å
Number of TM segments = 8
Sequence positions:
C: 966-988
B: 565-587
E: 1588-1609
F: 1987-2009
I: 3004-3026
H: 2602-2626
K: 3618-3645
L: 4019-4043
Tilt angles:
C - Segment: 966-988 - Tilt: 4.0°
B - Segment: 565-587 - Tilt: 16.4°
E - Segment: 1588-1609 - Tilt: 17.3°
F - Segment: 1987-2009 - Tilt: 10.4°
I - Segment: 3004-3026 - Tilt: 7.2°
H - Segment: 2602-2626 - Tilt: 29.7°
K - Segment: 3618-3645 - Tilt: 36.4°
L - Segment: 4019-4043 - Tilt: 23.6°
Structural assessment:
MAIDEN score = -70.3352
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]