The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2YXQ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.6 Å
Number of TM segments = 10
Sequence positions:
A: 29-43|70-94|110-123|145-161|167-183|216-229|251-268|320-334|378-393|399-415
Tilt angles:
A - Segment: 29-43 - Tilt: 14.6°
A - Segment: 70-94 - Tilt: 59.8°
A - Segment: 110-123 - Tilt: 21.8°
A - Segment: 145-161 - Tilt: 41.1°
A - Segment: 167-183 - Tilt: 27.8°
A - Segment: 216-229 - Tilt: 30.6°
A - Segment: 251-268 - Tilt: 49.1°
A - Segment: 320-334 - Tilt: 28.5°
A - Segment: 378-393 - Tilt: 26.3°
A - Segment: 399-415 - Tilt: 14.8°
Structural assessment:
MAIDEN score = -75.6993
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]