The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2YXQ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.7 Å
Number of TM segments = 10
Sequence positions:
A: 29-42|63-88|104-117|138-152|162-177|210-223|245-262|314-328|370-386|392-406
Tilt angles:
A - Segment: 29-42 - Tilt: 20.4°
A - Segment: 63-88 - Tilt: 56.6°
A - Segment: 104-117 - Tilt: 22.2°
A - Segment: 138-152 - Tilt: 31.5°
A - Segment: 162-177 - Tilt: 38.5°
A - Segment: 210-223 - Tilt: 29.9°
A - Segment: 245-262 - Tilt: 47.2°
A - Segment: 314-328 - Tilt: 27.1°
A - Segment: 370-386 - Tilt: 39.5°
A - Segment: 392-406 - Tilt: 1.0°
Structural assessment:
MAIDEN score = -61.5924
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]