The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2YXR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 30-43|73-95|109-122|145-159|168-184|216-229|251-266|321-334|376-392|399-412
Tilt angles:
A - Segment: 30-43 - Tilt: 20.9°
A - Segment: 73-95 - Tilt: 52.9°
A - Segment: 109-122 - Tilt: 13.3°
A - Segment: 145-159 - Tilt: 27.7°
A - Segment: 168-184 - Tilt: 37.6°
A - Segment: 216-229 - Tilt: 34.7°
A - Segment: 251-266 - Tilt: 36.4°
A - Segment: 321-334 - Tilt: 32.5°
A - Segment: 376-392 - Tilt: 45.3°
A - Segment: 399-412 - Tilt: 11.4°
Structural assessment:
MAIDEN score = -71.2471
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]