The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2YXR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 29-41|59-83|97-111|134-148|157-172|205-218|240-254|309-323|365-381|387-401
Tilt angles:
A - Segment: 29-41 - Tilt: 13.1°
A - Segment: 59-83 - Tilt: 58.0°
A - Segment: 97-111 - Tilt: 14.7°
A - Segment: 134-148 - Tilt: 27.0°
A - Segment: 157-172 - Tilt: 41.8°
A - Segment: 205-218 - Tilt: 32.0°
A - Segment: 240-254 - Tilt: 44.9°
A - Segment: 309-323 - Tilt: 29.1°
A - Segment: 365-381 - Tilt: 42.5°
A - Segment: 387-401 - Tilt: 2.5°
Structural assessment:
MAIDEN score = -56.1131
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]