Squid rhodopsin
Organism: Todarodes pacificus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 2Z73
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 7
Sequence positions:
A: 41-55|75-94|103-131|159-177|199-229|257-274|304-319
Tilt angles:
A - Segment: 41-55 - Tilt: 26.8°
A - Segment: 75-94 - Tilt: 45.9°
A - Segment: 103-131 - Tilt: 65.2°
A - Segment: 159-177 - Tilt: 38.8°
A - Segment: 199-229 - Tilt: 63.7°
A - Segment: 257-274 - Tilt: 46.6°
A - Segment: 304-319 - Tilt: 43.2°
Structural assessment:
MAIDEN score = -55.0969
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]