Squid rhodopsin
Organism: Todarodes pacificus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00001
PDB ID: 2Z73
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 7
Sequence positions:
A: 31-45|67-86|94-123|151-169|191-221|249-266|296-311
Tilt angles:
A - Segment: 31-45 - Tilt: 21.4°
A - Segment: 67-86 - Tilt: 47.8°
A - Segment: 94-123 - Tilt: 64.5°
A - Segment: 151-169 - Tilt: 40.9°
A - Segment: 191-221 - Tilt: 64.9°
A - Segment: 249-266 - Tilt: 46.4°
A - Segment: 296-311 - Tilt: 45.3°
Structural assessment:
MAIDEN score = -37.9167
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]