Bacterial Cyclic-Nucleotide Regulated Ion Channel
Organism: Rhizobium loti
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 2ZD9
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 24
Sequence positions:
A: 2-18|29-46|66-82|86-99|120-139|176-196
C: 462-477|488-505|525-541|545-558|578-598|635-655
B: 227-242|255-272|291-307|312-325|344-365|401-422
D: 694-710|721-738|758-774|778-791|812-831|868-888
Tilt angles:
A - Segment: 2-18 - Tilt: 15.6°
A - Segment: 29-46 - Tilt: 19.3°
A - Segment: 66-82 - Tilt: 14.8°
A - Segment: 86-99 - Tilt: 21.9°
A - Segment: 120-139 - Tilt: 35.5°
A - Segment: 176-196 - Tilt: 38.8°
C - Segment: 462-477 - Tilt: 14.3°
C - Segment: 488-505 - Tilt: 19.5°
C - Segment: 525-541 - Tilt: 16.5°
C - Segment: 545-558 - Tilt: 22.4°
C - Segment: 578-598 - Tilt: 33.8°
C - Segment: 635-655 - Tilt: 38.2°
B - Segment: 227-242 - Tilt: 9.6°
B - Segment: 255-272 - Tilt: 26.1°
B - Segment: 291-307 - Tilt: 11.8°
B - Segment: 312-325 - Tilt: 19.3°
B - Segment: 344-365 - Tilt: 35.2°
B - Segment: 401-422 - Tilt: 38.5°
D - Segment: 694-710 - Tilt: 14.7°
D - Segment: 721-738 - Tilt: 18.9°
D - Segment: 758-774 - Tilt: 15.3°
D - Segment: 778-791 - Tilt: 22.0°
D - Segment: 812-831 - Tilt: 34.8°
D - Segment: 868-888 - Tilt: 37.9°
Structural assessment:
MAIDEN score = -155.2391
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]