Squid rhodopsin
Organism: Todarodes pacificus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 2ZIY
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.4 Å
Number of TM segments = 7
Sequence positions:
A: 32-57|72-98|101-131|153-181|196-225|260-283|295-318
Tilt angles:
A - Segment: 32-57 - Tilt: 20.3°
A - Segment: 72-98 - Tilt: 34.9°
A - Segment: 101-131 - Tilt: 42.8°
A - Segment: 153-181 - Tilt: 24.2°
A - Segment: 196-225 - Tilt: 42.9°
A - Segment: 260-283 - Tilt: 9.2°
A - Segment: 295-318 - Tilt: 10.5°
Structural assessment:
MAIDEN score = -51.3635
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]