Squid rhodopsin
Organism: Todarodes pacificus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00001
PDB ID: 2ZIY
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.0 Å
Number of TM segments = 7
Sequence positions:
A: 29-53|66-95|97-132|148-177|196-226|254-278|294-316
Tilt angles:
A - Segment: 29-53 - Tilt: 27.8°
A - Segment: 66-95 - Tilt: 41.0°
A - Segment: 97-132 - Tilt: 48.2°
A - Segment: 148-177 - Tilt: 31.1°
A - Segment: 196-226 - Tilt: 42.9°
A - Segment: 254-278 - Tilt: 22.6°
A - Segment: 294-316 - Tilt: 15.4°
Structural assessment:
MAIDEN score = -32.7124
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]