SecYE translocon from Thermus thermophilus with a Fab fragment
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2ZJS
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 11
Sequence positions:
Y: 18-32|71-89|114-127|157-175|182-196|221-234|263-277|305-318|361-375|388-404
E: 429-452
Tilt angles:
Y - Segment: 18-32 - Tilt: 33.3°
Y - Segment: 71-89 - Tilt: 48.8°
Y - Segment: 114-127 - Tilt: 8.6°
Y - Segment: 157-175 - Tilt: 43.2°
Y - Segment: 182-196 - Tilt: 27.5°
Y - Segment: 221-234 - Tilt: 28.1°
Y - Segment: 263-277 - Tilt: 42.6°
Y - Segment: 305-318 - Tilt: 8.8°
Y - Segment: 361-375 - Tilt: 24.8°
Y - Segment: 388-404 - Tilt: 14.0°
E - Segment: 429-452 - Tilt: 60.7°
Structural assessment:
MAIDEN score = -66.7051
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]