SecYE translocon from Thermus thermophilus
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2ZQP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.3 Å
Number of TM segments = 11
Sequence positions:
Y: 18-36|70-90|114-129|154-175|182-197|218-235|269-287|311-326|367-383|394-410
E: 27-56
Tilt angles:
Y - Segment: 18-36 - Tilt: 40.8°
Y - Segment: 70-90 - Tilt: 42.1°
Y - Segment: 114-129 - Tilt: 3.9°
Y - Segment: 154-175 - Tilt: 40.8°
Y - Segment: 182-197 - Tilt: 27.1°
Y - Segment: 218-235 - Tilt: 28.6°
Y - Segment: 269-287 - Tilt: 42.8°
Y - Segment: 311-326 - Tilt: 3.6°
Y - Segment: 367-383 - Tilt: 24.4°
Y - Segment: 394-410 - Tilt: 14.7°
E - Segment: 27-56 - Tilt: 62.1°
Structural assessment:
MAIDEN score = -53.5435
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]