SecYE translocon from Thermus thermophilus
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2ZQP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 11
Sequence positions:
Y: 18-35|70-87|115-129|154-172|183-197|220-234|262-280|304-319|358-374|388-402
E: 430-460
Tilt angles:
Y - Segment: 18-35 - Tilt: 41.6°
Y - Segment: 70-87 - Tilt: 41.7°
Y - Segment: 115-129 - Tilt: 14.0°
Y - Segment: 154-172 - Tilt: 43.9°
Y - Segment: 183-197 - Tilt: 28.9°
Y - Segment: 220-234 - Tilt: 20.7°
Y - Segment: 262-280 - Tilt: 46.1°
Y - Segment: 304-319 - Tilt: 3.0°
Y - Segment: 358-374 - Tilt: 35.0°
Y - Segment: 388-402 - Tilt: 21.4°
E - Segment: 430-460 - Tilt: 61.7°
Structural assessment:
MAIDEN score = -50.9580
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]