Bacteriorhodopsin's M intermediate at pH 7
Organism: Halobacterium salinarum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 2ZZL
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.4 Å
Number of TM segments = 6
Sequence positions:
A: 9-26|47-66|78-93|112-128|132-149|177-196
Tilt angles:
A - Segment: 9-26 - Tilt: 24.9°
A - Segment: 47-66 - Tilt: 17.3°
A - Segment: 78-93 - Tilt: 5.5°
A - Segment: 112-128 - Tilt: 9.9°
A - Segment: 132-149 - Tilt: 18.4°
A - Segment: 177-196 - Tilt: 22.1°
Structural assessment:
MAIDEN score = -34.6979
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]