Bacteriorhodopsin's M intermediate at pH 7
Organism: Halobacterium salinarum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 2ZZL
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 7
Sequence positions:
A: 11-31|35-50|78-92|104-121|128-142|176-188|199-217
Tilt angles:
A - Segment: 11-31 - Tilt: 54.2°
A - Segment: 35-50 - Tilt: 32.6°
A - Segment: 78-92 - Tilt: 32.3°
A - Segment: 104-121 - Tilt: 45.0°
A - Segment: 128-142 - Tilt: 37.0°
A - Segment: 176-188 - Tilt: 31.6°
A - Segment: 199-217 - Tilt: 54.2°
Structural assessment:
MAIDEN score = -25.3202
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]