Br-substituted Photosystem II complex
Organism: Thermosynechococcus vulcanus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00421
PDB ID: 3A0B
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.8 Å
Number of TM segments = 72
Sequence positions:
A: 28-50|114-132|141-160|195-217|273-292
C: 50-70|113-131|157-177|236-254|270-287|426-446
B: 19-37|95-114|138-157|198-217|236-254|452-471
E: 19-38
D: 32-54|110-130|141-160|194-217|269-288
F: 20-39
I: 4-24
H: 29-47
K: 20-39
J: 12-30
M: 8-27
L: 15-32
N: 3-20
T: 4-24
Y: 20-37
X: 17-37
Z: 4-24|39-58
a: 5028-5050|5114-5132|5141-5160|5195-5217|5272-5292
c: 5049-5069|5113-5133|5157-5176|5236-5254|5270-5287|5428-5446
b: 5016-5034|5092-5111|5135-5154|5195-5214|5233-5251|5450-5468
e: 5019-5037
d: 5030-5053|5110-5130|5140-5159|5195-5217|5267-5287
f: 5018-5039
i: 5004-5024
h: 5028-5047
k: 5021-5041
j: 5011-5029
m: 5008-5027
l: 5015-5032
n: 5004-5022
t: 5004-5023
y: 5002-5020
x: 5019-5037
z: 5004-5024|5039-5057
Tilt angles:
A - Segment: 28-50 - Tilt: 16.4°
A - Segment: 114-132 - Tilt: 16.4°
A - Segment: 141-160 - Tilt: 3.3°
A - Segment: 195-217 - Tilt: 36.6°
A - Segment: 273-292 - Tilt: 19.8°
C - Segment: 50-70 - Tilt: 25.5°
C - Segment: 113-131 - Tilt: 11.1°
C - Segment: 157-177 - Tilt: 24.2°
C - Segment: 236-254 - Tilt: 8.8°
C - Segment: 270-287 - Tilt: 9.7°
C - Segment: 426-446 - Tilt: 27.9°
B - Segment: 19-37 - Tilt: 12.0°
B - Segment: 95-114 - Tilt: 13.4°
B - Segment: 138-157 - Tilt: 18.5°
B - Segment: 198-217 - Tilt: 8.4°
B - Segment: 236-254 - Tilt: 6.4°
B - Segment: 452-471 - Tilt: 13.8°
E - Segment: 19-38 - Tilt: 11.1°
D - Segment: 32-54 - Tilt: 34.7°
D - Segment: 110-130 - Tilt: 28.9°
D - Segment: 141-160 - Tilt: 11.7°
D - Segment: 194-217 - Tilt: 33.5°
D - Segment: 269-288 - Tilt: 20.9°
F - Segment: 20-39 - Tilt: 25.2°
I - Segment: 4-24 - Tilt: 31.9°
H - Segment: 29-47 - Tilt: 17.6°
K - Segment: 20-39 - Tilt: 23.5°
J - Segment: 12-30 - Tilt: 10.0°
M - Segment: 8-27 - Tilt: 5.4°
L - Segment: 15-32 - Tilt: 10.2°
N - Segment: 3-20 - Tilt: 9.2°
T - Segment: 4-24 - Tilt: 15.4°
Y - Segment: 20-37 - Tilt: 7.8°
X - Segment: 17-37 - Tilt: 24.3°
Z - Segment: 4-24 - Tilt: 38.5°
Z - Segment: 39-58 - Tilt: 11.6°
a - Segment: 5028-5050 - Tilt: 17.0°
a - Segment: 5114-5132 - Tilt: 17.5°
a - Segment: 5141-5160 - Tilt: 3.6°
a - Segment: 5195-5217 - Tilt: 36.4°
a - Segment: 5272-5292 - Tilt: 26.2°
c - Segment: 5049-5069 - Tilt: 21.8°
c - Segment: 5113-5133 - Tilt: 18.3°
c - Segment: 5157-5176 - Tilt: 18.5°
c - Segment: 5236-5254 - Tilt: 8.1°
c - Segment: 5270-5287 - Tilt: 9.2°
c - Segment: 5428-5446 - Tilt: 24.1°
b - Segment: 5016-5034 - Tilt: 13.3°
b - Segment: 5092-5111 - Tilt: 13.4°
b - Segment: 5135-5154 - Tilt: 18.3°
b - Segment: 5195-5214 - Tilt: 8.2°
b - Segment: 5233-5251 - Tilt: 5.8°
b - Segment: 5450-5468 - Tilt: 15.2°
e - Segment: 5019-5037 - Tilt: 16.7°
d - Segment: 5030-5053 - Tilt: 26.4°
d - Segment: 5110-5130 - Tilt: 27.2°
d - Segment: 5140-5159 - Tilt: 9.5°
d - Segment: 5195-5217 - Tilt: 37.8°
d - Segment: 5267-5287 - Tilt: 32.5°
f - Segment: 5018-5039 - Tilt: 31.7°
i - Segment: 5004-5024 - Tilt: 32.6°
h - Segment: 5028-5047 - Tilt: 15.4°
k - Segment: 5021-5041 - Tilt: 31.4°
j - Segment: 5011-5029 - Tilt: 11.3°
m - Segment: 5008-5027 - Tilt: 5.6°
l - Segment: 5015-5032 - Tilt: 9.7°
n - Segment: 5004-5022 - Tilt: 5.5°
t - Segment: 5004-5023 - Tilt: 13.0°
y - Segment: 5002-5020 - Tilt: 8.1°
x - Segment: 5019-5037 - Tilt: 23.2°
z - Segment: 5004-5024 - Tilt: 37.4°
z - Segment: 5039-5057 - Tilt: 15.0°
Structural assessment:
MAIDEN score = -384.3232
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]