Br-substituted Photosystem II complex
Organism: Thermosynechococcus vulcanus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00421
PDB ID: 3A0B
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.1 Å
Number of TM segments = 70
Sequence positions:
A: 19-41|104-123|132-151|186-208|263-283
C: 843-863|907-925|951-971|1030-1048|1063-1081|1220-1240
B: 350-368|426-445|467-488|529-548|566-584|783-802
E: 1623-1642
D: 1283-1308|1365-1385|1395-1414|1449-1472|1522-1542
F: 1697-1717
I: 1791-1812
H: 1751-1770
K: 1868-1887
J: 1828-1846
M: 1938-1956
L: 1907-1925
T: 2212-2231
Y: 2509-2526
X: 2480-2500
Z: 2563-2583|2597-2616
a: 2639-2662|2725-2744|2753-2772|2807-2829|2884-2904
c: 3464-3485|3528-3546|3572-3592|3651-3670|3684-3702|3841-3861
b: 2971-2990|3047-3065|3090-3110|3149-3168|3188-3206|3403-3423
e: 4245-4264
d: 3907-3930|3985-4005|4017-4036|4070-4093|4143-4164
f: 4319-4339
i: 4413-4433
h: 4372-4391
k: 4487-4508
j: 4449-4468
m: 4558-4577
l: 4528-4546
t: 4833-4852
y: 5130-5146
x: 5100-5120
z: 5183-5204|5219-5238
Tilt angles:
A - Segment: 19-41 - Tilt: 16.8°
A - Segment: 104-123 - Tilt: 11.9°
A - Segment: 132-151 - Tilt: 3.1°
A - Segment: 186-208 - Tilt: 35.3°
A - Segment: 263-283 - Tilt: 24.5°
C - Segment: 843-863 - Tilt: 21.6°
C - Segment: 907-925 - Tilt: 11.9°
C - Segment: 951-971 - Tilt: 23.8°
C - Segment: 1030-1048 - Tilt: 5.8°
C - Segment: 1063-1081 - Tilt: 4.6°
C - Segment: 1220-1240 - Tilt: 24.6°
B - Segment: 350-368 - Tilt: 13.7°
B - Segment: 426-445 - Tilt: 12.9°
B - Segment: 467-488 - Tilt: 22.2°
B - Segment: 529-548 - Tilt: 7.1°
B - Segment: 566-584 - Tilt: 6.1°
B - Segment: 783-802 - Tilt: 13.5°
E - Segment: 1623-1642 - Tilt: 17.0°
D - Segment: 1283-1308 - Tilt: 16.2°
D - Segment: 1365-1385 - Tilt: 25.0°
D - Segment: 1395-1414 - Tilt: 9.7°
D - Segment: 1449-1472 - Tilt: 32.4°
D - Segment: 1522-1542 - Tilt: 30.2°
F - Segment: 1697-1717 - Tilt: 34.1°
I - Segment: 1791-1812 - Tilt: 31.6°
H - Segment: 1751-1770 - Tilt: 15.7°
K - Segment: 1868-1887 - Tilt: 23.2°
J - Segment: 1828-1846 - Tilt: 11.1°
M - Segment: 1938-1956 - Tilt: 1.9°
L - Segment: 1907-1925 - Tilt: 9.2°
T - Segment: 2212-2231 - Tilt: 12.0°
Y - Segment: 2509-2526 - Tilt: 7.1°
X - Segment: 2480-2500 - Tilt: 22.1°
Z - Segment: 2563-2583 - Tilt: 35.4°
Z - Segment: 2597-2616 - Tilt: 10.1°
a - Segment: 2639-2662 - Tilt: 10.6°
a - Segment: 2725-2744 - Tilt: 10.0°
a - Segment: 2753-2772 - Tilt: 4.1°
a - Segment: 2807-2829 - Tilt: 35.2°
a - Segment: 2884-2904 - Tilt: 24.1°
c - Segment: 3464-3485 - Tilt: 22.3°
c - Segment: 3528-3546 - Tilt: 10.9°
c - Segment: 3572-3592 - Tilt: 23.7°
c - Segment: 3651-3670 - Tilt: 9.8°
c - Segment: 3684-3702 - Tilt: 5.8°
c - Segment: 3841-3861 - Tilt: 26.1°
b - Segment: 2971-2990 - Tilt: 10.2°
b - Segment: 3047-3065 - Tilt: 11.1°
b - Segment: 3090-3110 - Tilt: 15.0°
b - Segment: 3149-3168 - Tilt: 5.8°
b - Segment: 3188-3206 - Tilt: 6.3°
b - Segment: 3403-3423 - Tilt: 19.2°
e - Segment: 4245-4264 - Tilt: 11.7°
d - Segment: 3907-3930 - Tilt: 27.7°
d - Segment: 3985-4005 - Tilt: 24.6°
d - Segment: 4017-4036 - Tilt: 13.7°
d - Segment: 4070-4093 - Tilt: 33.4°
d - Segment: 4143-4164 - Tilt: 28.1°
f - Segment: 4319-4339 - Tilt: 26.9°
i - Segment: 4413-4433 - Tilt: 29.5°
h - Segment: 4372-4391 - Tilt: 14.7°
k - Segment: 4487-4508 - Tilt: 30.0°
j - Segment: 4449-4468 - Tilt: 5.7°
m - Segment: 4558-4577 - Tilt: 5.6°
l - Segment: 4528-4546 - Tilt: 11.1°
t - Segment: 4833-4852 - Tilt: 13.0°
y - Segment: 5130-5146 - Tilt: 15.3°
x - Segment: 5100-5120 - Tilt: 27.4°
z - Segment: 5183-5204 - Tilt: 32.6°
z - Segment: 5219-5238 - Tilt: 10.9°
Structural assessment:
MAIDEN score = -366.2649
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]