Proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum
Organism: Acetabularia acetabulum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 3AM6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 36.0 Å
Number of TM segments = 7
Sequence positions:
A: 10-34|36-58|73-95|97-120|128-151|160-183|194-218
Tilt angles:
A - Segment: 10-34 - Tilt: 11.9°
A - Segment: 36-58 - Tilt: 4.7°
A - Segment: 73-95 - Tilt: 11.2°
A - Segment: 97-120 - Tilt: 2.8°
A - Segment: 128-151 - Tilt: 14.8°
A - Segment: 160-183 - Tilt: 4.1°
A - Segment: 194-218 - Tilt: 9.5°
Structural assessment:
MAIDEN score = -68.9201
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]