SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02355
PDB ID: 3AQP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.0 Å
Number of TM segments = 12
Sequence positions:
A: 6-25|271-291|298-323|326-343|374-392|396-418|451-472|568-588|594-617|621-639|672-691|693-716
Tilt angles:
A - Segment: 6-25 - Tilt: 8.0°
A - Segment: 271-291 - Tilt: 17.0°
A - Segment: 298-323 - Tilt: 25.4°
A - Segment: 326-343 - Tilt: 12.1°
A - Segment: 374-392 - Tilt: 18.6°
A - Segment: 396-418 - Tilt: 35.7°
A - Segment: 451-472 - Tilt: 15.5°
A - Segment: 568-588 - Tilt: 17.5°
A - Segment: 594-617 - Tilt: 35.3°
A - Segment: 621-639 - Tilt: 6.5°
A - Segment: 672-691 - Tilt: 13.5°
A - Segment: 693-716 - Tilt: 25.6°
Structural assessment:
MAIDEN score = -95.5468
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]