SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02355
PDB ID: 3AQP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.2 Å
Number of TM segments = 12
Sequence positions:
A: 5-23|272-290|297-320|325-342|372-391|395-417|449-468|562-580|587-608|614-632|665-683|687-708
Tilt angles:
A - Segment: 5-23 - Tilt: 6.5°
A - Segment: 272-290 - Tilt: 11.3°
A - Segment: 297-320 - Tilt: 34.2°
A - Segment: 325-342 - Tilt: 11.4°
A - Segment: 372-391 - Tilt: 13.2°
A - Segment: 395-417 - Tilt: 35.7°
A - Segment: 449-468 - Tilt: 7.3°
A - Segment: 562-580 - Tilt: 12.7°
A - Segment: 587-608 - Tilt: 40.8°
A - Segment: 614-632 - Tilt: 5.5°
A - Segment: 665-683 - Tilt: 15.2°
A - Segment: 687-708 - Tilt: 31.4°
Structural assessment:
MAIDEN score = -82.4694
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]