Octameric pore form of gamma-hemolysin from Staphylococcus aureus
Organism: Staphylococcus aureus
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF07968
PDB ID: 3B07
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.4 Å
Number of TM segments = 16
Sequence positions:
A: 119-125|130-136
C: 119-125|130-136
B: 112-119|122-128
E: 118-125|130-136
D: 112-119|122-128
G: 119-125|130-136
F: 112-119|122-128
H: 112-119|122-128
Tilt angles:
A - Segment: 119-125 - Tilt: 38.2°
A - Segment: 130-136 - Tilt: 35.8°
C - Segment: 119-125 - Tilt: 40.0°
C - Segment: 130-136 - Tilt: 36.4°
B - Segment: 112-119 - Tilt: 34.6°
B - Segment: 122-128 - Tilt: 35.6°
E - Segment: 118-125 - Tilt: 35.3°
E - Segment: 130-136 - Tilt: 35.2°
D - Segment: 112-119 - Tilt: 35.6°
D - Segment: 122-128 - Tilt: 34.9°
G - Segment: 119-125 - Tilt: 38.7°
G - Segment: 130-136 - Tilt: 34.8°
F - Segment: 112-119 - Tilt: 34.3°
F - Segment: 122-128 - Tilt: 34.3°
H - Segment: 112-119 - Tilt: 34.6°
H - Segment: 122-128 - Tilt: 34.5°
Structural assessment:
MAIDEN score = -25.5488
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]