Octameric pore form of gamma-hemolysin from Staphylococcus aureus
Organism: Staphylococcus aureus
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF07968
PDB ID: 3B07
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.4 Å
Number of TM segments = 16
Sequence positions:
A: 103-109|114-120
C: 387-393|398-404
B: 1239-1245|1248-1254
E: 671-677|682-688
D: 1509-1515|1518-1524
G: 955-961|966-972
F: 1778-1785|1788-1794
H: 2049-2055|2058-2064
Tilt angles:
A - Segment: 103-109 - Tilt: 35.2°
A - Segment: 114-120 - Tilt: 34.9°
C - Segment: 387-393 - Tilt: 37.5°
C - Segment: 398-404 - Tilt: 36.6°
B - Segment: 1239-1245 - Tilt: 31.2°
B - Segment: 1248-1254 - Tilt: 35.8°
E - Segment: 671-677 - Tilt: 37.3°
E - Segment: 682-688 - Tilt: 36.7°
D - Segment: 1509-1515 - Tilt: 34.5°
D - Segment: 1518-1524 - Tilt: 36.8°
G - Segment: 955-961 - Tilt: 37.7°
G - Segment: 966-972 - Tilt: 35.6°
F - Segment: 1778-1785 - Tilt: 36.2°
F - Segment: 1788-1794 - Tilt: 36.6°
H - Segment: 2049-2055 - Tilt: 32.9°
H - Segment: 2058-2064 - Tilt: 35.1°
Structural assessment:
MAIDEN score = 340.7466
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]